Scaffold Ga0180121_10219218

Overview

Basic Information

• Taxon OID: 3300017695
• Scaffold ID: Ga0180121_10219218
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 710
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.024
  • Long. (^o): 163.9124

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018768	Metagenome / Metatranscriptome	233	Y
F023391	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180121_102192181	F023391	N/A	IHITVLRHAMASLQLTQVYLERHQKDALQARAKANGTKVAEEVRRAVDAYLAGVSPEDLLLLDEGTRKPERHLSEMADELDRVNAKLDAAFTELDRKHHKARKSR
Ga0180121_102192182	F018768	GGA	MSVITEILDRLSGIEVVKEKLRGTGGRVEQLAERMINLDRQLQDVDRRLFRIEAFAEITKARQPRLPRDQ