Scaffold Ga0180121_10000761

Overview

Basic Information

• Taxon OID: 3300017695
• Scaffold ID: Ga0180121_10000761
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13571
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.024
  • Long. (^o): 163.9124

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004743	Metagenome / Metatranscriptome	425	Y
F008275	Metagenome / Metatranscriptome	336	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180121_1000076110	F008275	GGGGG	MIDRQLEYEKTEGPTPAVQAAADPLLSDRPGRVHWVVVITRQVEGPAGPGSPNLHTRFWHPRDRRWSENVFDSLDHALRLFVDESGWVLRQHQTLDAPETHELIFEARREDFSRPSTAEMLEDVGLTREDVAKLLNRVDRDSGTA
Ga0180121_1000076112	F004743	GGAGG	MAEPSFADQMATLNSTLGAIEVRLALGRAPVEGLEQFKSALDDMRLRLWGLLSASGGADAKGFQEQFRIRRATEMCRGLGTDLHAGSLSGRHRELTSLREAAVELAQKIEQAQRDAF