Scaffold Ga0182212_1046750

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182212_1046750

Scaffold Ga0182212_1046750

Overview

Basic Information
Taxon OID	3300017691 Open in IMG/M
Scaffold ID	Ga0182212_1046750 Open in IMG/M
Source Dataset Name	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	948
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001014	Metagenome / Metatranscriptome	805	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182212_10467502	F001014	GGAGG	VHLMHPILIFTMGQLRQRNGVKPPETRVLDVKYMVRNQTDVVEHRNGVKIPKILVLVLKECIKIFQVVCLESYYSETFNQMHTDTSFRNGSGASTKWRKTFENMSFGPKVVDWAYSLLENKK

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