Scaffold Ga0182223_1013067

Overview

Basic Information

• Taxon OID: 3300017690
• Scaffold ID: Ga0182223_1013067
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_03OCT2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 925
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001700	Metagenome	649	Y
F008753	Metagenome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182223_10130672	F001700	AGGAG	VKRCTQLCTRNVLAQVRVLAPEVPLSKIAEEAESQEYLDAVEKVEPEVKDLARRIVDNLNIDISSPDDGA
Ga0182223_10130673	F008753	GGAGG	VQWYYGFFLFPFVFKSPFLLTCFLVPGLALRVEKQKLSEGIEEMKILVRNNHNRAEEAISRAEEELALAKLIRRGADRDLVQAQKTIEVLTSKLTTATENWNALWKSFRSVADLLRTPTDDGQYWAQFIPKVLTRF