NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182205_1112667

Scaffold Ga0182205_1112667


Overview

Basic Information
Taxon OID3300017686 Open in IMG/M
Scaffold IDGa0182205_1112667 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12SEP2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034009Metagenome175Y
F067277Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0182205_11126671F067277GGAGMPSLVVHAVGYKMFIGAHNTVNVICIREVASSSSGMTDVCARHTVDAERHAGDFTMFTWYGKCRRPQHYWCPEACGGSLTIFVW
Ga0182205_11126672F034009N/AGSGNVPYVQFGSVGDFIPEPKCLKFVVGLQMEGRKIRGTRGLVGLWSEGLRVMGAPLCARCSSVYLWFEPGGFVVVY

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