Scaffold Ga0182225_1073617

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182225_1073617

Scaffold Ga0182225_1073617

Overview

Basic Information
Taxon OID	3300017684 Open in IMG/M
Scaffold ID	Ga0182225_1073617 Open in IMG/M
Source Dataset Name	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_03OCT2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	620
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000755	Metagenome	905	Y
F003472	Metagenome	484	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182225_10736171	F000755	N/A	MEPLTEENEKLKEAMKLMEKNIQRAQRERDLAESNTWDLEYQKGVLSEQLVTVFEQLRGKFE
Ga0182225_10736172	F003472	GAG	VIVEEEDTTRELKRLESALAGVMKQIKVSTTSIMFIYNVGDCSSS

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