NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182229_1098081

Scaffold Ga0182229_1098081


Overview

Basic Information
Taxon OID3300017682 Open in IMG/M
Scaffold IDGa0182229_1098081 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_07NOV2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005150Metagenome410Y
F100526Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0182229_10980811F100526N/AKEDEVEEVLGHPQDKRQHVYVSRWRNDEWVMHEEIPEVEETLKVERAAKRLVTEVQVCLVWPLDPVM
Ga0182229_10980812F005150AGGMKTAKYQKRCFDHIEGITATNKELAAEVECLRRQLEAADQERTEREAQNQNLVGQLNNKEREKTSKFSSYHSKCRTRVVALLVVTAVMQV

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