Scaffold Ga0182229_1034800

Overview

Basic Information

• Taxon OID: 3300017682
• Scaffold ID: Ga0182229_1034800
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_07NOV2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 867
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005265	Metagenome	406	Y
F010819	Metagenome	298	Y
F048377	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182229_10348001	F048377	N/A	VYVSRYRNDGWVMHEEIPEVKETLRVEWAAKHLVTEVQVHLA
Ga0182229_10348002	F005265	N/A	MQDLMKTAKYRKRCFDQIEGITATNKELAAEVERLRRQLEAAD
Ga0182229_10348003	F010819	GAGG	VIKERDDWKAQCLKATEERDTWNKRCQEMATGIMPVLDLIDPALTEE