NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0134074_1002434

Scaffold Ga0134074_1002434


Overview

Basic Information
Taxon OID3300017657 Open in IMG/M
Scaffold IDGa0134074_1002434 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6069
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014247Metagenome264Y
F082488Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0134074_10024342F082488GGAMRVGIIVSGIVILVAGVLYLLYSTSDPDYFPVAVFALPLGCLNLAFGILTAKGGGVSISSNAQDPVKMVVDRGVIGSTIYVILFSDRKLVLKRLTSGSVTVLAVVVFAVVGLLFAYFIGAAIGGLTAFSLQEFLTQRRRDAAKMGNPLVASGKGDLEFAYADLERVQLTKSRLRLHLRNGIMGIVISRRYPEKMRPIIEGLISSSKMAEPV
Ga0134074_10024343F014247N/AMASVGRSLFWSGLWVFSVATGLASMIFMAWAFYVETTGRGALFIEPNRILAAGELPTVPTGMVALIILFLRALSHRD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.