Scaffold Ga0134112_10006891

Overview

Basic Information

• Taxon OID: 3300017656
• Scaffold ID: Ga0134112_10006891
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3659
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002984	Metagenome / Metatranscriptome	515	Y
F015316	Metagenome / Metatranscriptome	255	Y
F017980	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134112_100068913	F002984	AGG	VTTTPVARRFSLALIAGAIAAAVSCADPSPVGVDLRGTGPAFEVVKLPADTGLVRCGQTFDSVTQVIGPAGGVIAVGHHFLWVDTMALADTVSITAVAPADSVRWVRFQPDGLQFRTNGAGRSAILFTSYKDCGVPAADTLRIAQVTDSLGILGYLETYVQIRRRSWSQGNQYVYGVLHHFSQYAVSW
Ga0134112_100068914	F017980	AGG	MNSINQSSVRRWLIPLALLAGASAAASSCGDPSPVGVEPRLAAQKVAPGRLLSCPPAAYDSVTQVIGPAGGLLVVGSHVLVVDSLALSSPVSITAVAPSQSVNMVRLRPEGLKFKPGVHGIGALVATNLDNCGVHPNQVLQVVNVSDSLRILGYLQAPTMTDSAVVVKYKTYLGSLWVGGLLAHFSNYAVAW
Ga0134112_100068915	F015316	N/A	KGPGLVACSQKYDSVTQVIGPAGGLIAVGRHLLWVDSMALSDTVRITAVAPADTVRWVRFQPDGLQFRTNGAGWSALLFTSFKDCGVPTADTLRIAQVTDSLSIIRYLASPESTFIRIRKKPWSKGNQYVAGVLHHFSQYAVSW