Scaffold Ga0134112_10004041

Overview

Basic Information

• Taxon OID: 3300017656
• Scaffold ID: Ga0134112_10004041
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4618
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F010154	Metagenome / Metatranscriptome	307	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134112_100040411	F010022	N/A	SSPRPGNPQPPWIRSPGRSLIVGLMLSSGTVMRKNILVVAFAMLALALLFGVSYPPAFLFVVLFGIPISILNTILGLITRTPPGLEFQPESAKIRLIIDRGVVRASIYQLVFLNSKLILKRLTSVMVTVILALVLAVVGFEVLGIIGALMGGVTGFSLQEFLTQRMRNKIGTEMQLTSLGKNDIEIEYNDLLEVRLVKSRLHLISENGSLTANFPGGYAIKIKPMLADLFETKFTTEESLRAAEAAEKENEKRQHPGSDRGKFSRR
Ga0134112_100040414	F010154	GGAG	VFASFQTAPSNGPNTPLGWASFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKAYLWTEVVFRTLLAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLDRIFDLKPIMED