Scaffold Ga0134069_1018544

Overview

Basic Information

• Taxon OID: 3300017654
• Scaffold ID: Ga0134069_1018544
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2072
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002984	Metagenome / Metatranscriptome	515	Y
F017980	Metagenome	237	Y
F058882	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134069_10185441	F017980	AGG	MKSINRSSVRPWLIPLALLAGASAAASSCGDPSPVGVEPRLAAQKVGAGRLLSCPPAAYDSVTQVIGPAGGLLVVGSHVLVVDSLALSSPVSITAVAPSQSVNLVRLRPEGLKFKPGVHGIGALVATNLDNCGVHPNQVLQVVNVSDSLRILGYLQAPTMTDSAVVVKYKTYLGSLWVGGLLHHFSNYAVAW
Ga0134069_10185442	F002984	GGTGG	VTTTPVARRFPLALIAGAIAAAVSCADPSPVGVDLRGTGPAFEVVKLPADTGLVRCGQTFDSVTQVIGPAGGVIAVGHHFLWVDTMALADTVSITAVAPADSVRWVRFQPDGLQFRTNGAGRSAILFTSYKDCGVPTADTLRIAQVTDSLGILGYLETYVQIRRRSWSQGNQYVYGVLHHFSQYAVSW
Ga0134069_10185444	F058882	GGAGG	MDTSSLVVDQARQLTAAGQHAEVVNYLAARQGSELVESASLALLYGTAQARVGRHAEGLRWLD