Scaffold Ga0182740_1000023

Overview

Basic Information

• Taxon OID: 3300017644
• Scaffold ID: Ga0182740_1000023
• Source Dataset Name: Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft BY (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 386616
• Total Scaffold Genes: 369
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 286 (77.51%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017885	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182740_100002323	F017885	GAG	MSSTDMNEICFQCPSCGHDLKQSIGRLKQSQHMTCPGCGIGINIDTNRLAQVSEEIQKAIDKVPPEITIKFYRPIEQD