Scaffold Ga0183098_10024

Overview

Basic Information

• Taxon OID: 3300017642
• Scaffold ID: Ga0183098_10024
• Source Dataset Name: Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 9 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 716653
• Total Scaffold Genes: 583
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 431 (73.93%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Berkeley, California
• Coordinates
  • Lat. (^o): 37.82
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004177	Metagenome / Metatranscriptome	449	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183098_10024574	F004177	N/A	MSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQPLYLNRPVTVGDVKAYVQAAPTGSGLTFTIYVGGTTWLTLTIPAGQTAVVATPSQISTLTQIPANTSVSIGIAAVGTTFPGANLSVFIYS