NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186373_1052229

Scaffold Ga0186373_1052229


Overview

Basic Information
Taxon OID3300017506 Open in IMG/M
Scaffold IDGa0186373_1052229 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from North Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 148 ?mol photons light - Neoceratium fusus PA161109 (MMETSP1075)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)41.57083Long. (o)-71.40517Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100294Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0186373_10522291F100294N/ASQAIWTFLHTTSLGIMASTTAEEIKGVEANQPAQREGKRTSSPAPKTTLNGGAPKADPKAQAAAHGKPQDKKPPKEPFAMGMAGLVSLVMCVLIVCMHLLYGIPFLTKMGVPFAAALREYRIPVGIVVAGMLIGAAAFAKRLRANGKEKAS

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