Scaffold Ga0186477_1045833

Overview

Basic Information

• Taxon OID: 3300017504
• Scaffold ID: Ga0186477_1045833
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Baltic Sea in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 306 ?mol photons light - Scrippsiella Hangoei SHTV-5 (MMETSP0359)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 793
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 59.51
  • Long. (^o): 23.13
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006386	Metatranscriptome	374	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186477_10458331	F006386	N/A	PGGKCDKGFYNKWLPVRAKHVSFQLFLWTCIWLLGSVGLGRPLSEGWRFVFLVSCFIRVGFSLAWIFIANFNHSHMWNEFLAGDPERTWPMLHAFMAFALGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVEILSNGLWKSDDAETIMESHQKRRSLVMKSAKNKH