Scaffold Ga0186467_1023840

Overview

Basic Information

• Taxon OID: 3300017493
• Scaffold ID: Ga0186467_1023840
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Derwent River in Gse medium, 18 C, 35 psu salinity and 319 ?mol photons light - Alexandrium margalefii AMGDE01CS-322 (MMETSP0661)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 859
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Tasmania: Derwent River
• Coordinates
  • Lat. (^o): 43.03333
  • Long. (^o): 147.36667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040651	Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186467_10238401	F040651	N/A	LVFEAQNPERFSMDVSDVVVADRLGYLARSLTVNATGKRVEEHIYASERAGEIIYRLVDPETKGETDDERVIAVKESPLRMEFFRRHASDGCRMYWHAPLDAVKRMMQELVDYAAKAEGEGEVVGLGLRSEEIKAVSHDSVWQSMMLSVRDPARFFPCSDVSIKEGFVQRTLTAGGETYSENIYFDERSSELVFRKLLNGSETGVERVVALRTHPLQLEFHQRNVADRFRVPWDLPGPAPLSSVGALVSEARRMDPARPTTVGYGITSDPIRDCSYDSLFAAVEL