NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187308_14855

Scaffold Ga0187308_14855


Overview

Basic Information
Taxon OID3300017469 Open in IMG/M
Scaffold IDGa0187308_14855 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6128
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0187308_148553F021133N/AMARRDELIRQIYENGNYAIKKICEMEPDGEMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSRQEQWHCKLHVGKPPKPYDFVVAQKHREILLKHGIYIWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELEKIVELQKEYITNIFKLN
Ga0187308_148554F023140N/ALKSHKRILISNVFIGLATVPIYIFLKSFPFFVVFGSGILTTLTVLILFFYFLGAKFVGTWATLQKFSVTLPTSFVLAHLVKHLPSDLFFDYVVLFFVGYVISTPLIFLTYYITMLIYGKK
Ga0187308_148556F008949AGGAGGMSTQTVQLGSQTITPKVQDLGNSYYIEFQVKITKYLNNPVNQTIDVKFTCNKYKQVVVPSNPLSPPTVQTVQKTIQECVDEWYNQHKSVYEVA
Ga0187308_148557F011097GGAGGMIRDVVLYTSGGTDPFTNLSTGGSPITGNGSNYQLLRFHPNYARLHIYITGLSGTSPSIQFTVGTFAGSNNYTLPSITSPQYVYIIGNENKTIITYLNTSSQVLQQVELPYNIFLNGVYVSWSVSGSSPSITAYIHFEFEDEEEGE
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