Scaffold Ga0187308_14803

Overview

Basic Information

• Taxon OID: 3300017469
• Scaffold ID: Ga0187308_14803
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7875
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011097	Metagenome / Metatranscriptome	295	Y
F011233	Metagenome / Metatranscriptome	293	N
F026309	Metagenome / Metatranscriptome	198	Y
F027904	Metagenome / Metatranscriptome	193	N
F045200	Metagenome / Metatranscriptome	153	Y
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1480310	F011233	AGGAG	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVELFKESVKEFFESITPSVVPPVVPTPPGFVAEEVVSAKLPIKVT
Ga0187308_1480311	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRSNPFNPLAPTQPGISLVRLGESVPPVRAFNIYVYNFANADLSVQVIANENAKNYAYGNLLDGLDYQSESSYPDFNVGSPVTVASGSLQQPGVQTVQADFYSTSAERYISVALTYSTAPSAGFVRAHIDLFYEGF
Ga0187308_1480312	F045200	GAGG	MSQGYITEEIGKVTLNQPEVVTLLSPIRDAQYLKSLQNPTSTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPAGTTNEKPLFSVFYAKVHPERYVPNAPASAWLDSPVLLVSYDQISSDVVNWADNVFTAAGYTPSSPGVINVPSNVGYIPNYGYVNYGGAPSTITLNFTGTPELKQLHMVYDMLDDTVLMYFSIIVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNNEPYFLGGLKFDDTVEQTIGNAGVLAWSGTLQLQSAPQFAISFDWYKLGGLLGYKPSNGFLPAIYVGNPLYMGFYNYPHGDSLIAIAFADIHKNPAQPQTYYQPINTSSGNGIINLIPENSGSCPSSYGGNSFYCIPILGFAGQLDTQGLGLNIDKFGSIVPGESFGIPGTYMVPITLPPRPDFGGISSMRMKMLYVAPIFHQWQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADSYIDGIAVYLDKSVISSKGKTLVTVPPLIFGQTSSGGSYYVITGFNAFNAAWRGVVTYTFAKKYARIYLIANAGNYAPINIYTRPRSRSAPDLQQMYGNSPASNNTSLYQPVLERNFGTLVYATDYAYNMPYNLEYSRTSKFRVDGQILWMIMTSNGLSPMFVELEGD
Ga0187308_1480313	F011097	AGG	MIRDVPLYTSGGTDPFASVYPFSVSTVGSPITGNGGNYQALRFHPNYARLLIYVTGLSGTSPSIQFAVGSLLGPNLYTLPPITSPQYVYVVGNENKTIITYISTSNVVLQQVELPYNIFFNGATVNWSVSGTSPSISVYIHFEFEDEEEGGECI
Ga0187308_148032	F026309	AGGAGG	MSLPAPLSNPNLFIGLVIFIVASVLLYLGRIPLSAWTTIVGVLLGYYFGYQYALMEVRRRGG
Ga0187308_148037	F067921	GAG	MESFERVDDRLLRNGQYLLVSYSGAKNPAQAMYTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGASPGPTNSPPYIDNFSFSLQEVKNVTDMFKITNTGDAYQVFYGISPSYLRVMNKVQQQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSAKTEFIVFVNLTYNVTLMNTATIPIVPAFNFVINRMILEPLGREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG
Ga0187308_148038	F027904	GGTGG	MEKYEPPEYDLFNLNNGSTAIGTSPASLLYEGQANAAVIVPPDLTLRVKQVIIQNATTSLITVQLLAVSTVSGAPSPVAKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI