Scaffold Ga0187308_14764

Overview

Basic Information

• Taxon OID: 3300017469
• Scaffold ID: Ga0187308_14764
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17693
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F011233	Metagenome / Metatranscriptome	293	N
F021133	Metagenome / Metatranscriptome	220	N
F026309	Metagenome / Metatranscriptome	198	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1476413	F026309	AGGTGG	MSLPAPLNNPNLFIGLVIFVVASILLYLGKLPLSAWTTIVGVLLGYYFGYQHGVYVQKSGRNG
Ga0187308_1476418	F067921	GGGGG	MYFERINDKILRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTGDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPILPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIIISPDNYPGLVSLSYKEIYGG
Ga0187308_1476419	F027904	GGTGG	MEKYNPPEYDLFNLNNGSTLVGTSSVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPANSAVTLDEDEWSISVKSGYSLAAVSSAANSANVFVKAYFVKGTGSPI
Ga0187308_1476421	F011233	AGCAGG	MTIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGEFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIVPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTSTSAGVPPRFVANEVVSTRLPIKVS
Ga0187308_1476422	F006070	AGG	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANADLSVQVIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSPVTVASGSLQQPGVQTVQADFYTTSAERYISLALTYSTAPSAGFVRAHIDLFYEGF
Ga0187308_1476424	F011097	GGAGG	MIRDVPLYTSGGTDPFTSITGVSTGGSPITGNGSNYQVLSFHPNYARLHIYITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNEDKTIITYLNTSNAVLQQVELPYNIFLNGAYVSWTVSGTSPSISAYIHFEFEDEEEGGE
Ga0187308_1476425	F008949	AGGAGG	MSSQTVKLGTQTITPKVEDLGNSYYIEFQVKITKYLNNSTNQTIDVKFTCNKYKQVVLPSANPLSPPTVQTAQKTIQECVDEWYAQHKSVYEVA
Ga0187308_1476426	F076262	AGGTGG	MSFNPVIKGSYTLASPQTVSVAASGSATVSVSFTPLGAGSLYVYITLPTGVTAAISIGAQTVSLSSGSNQFLIPANVAIGNITINNSLTTATSVVVWALFIEVT
Ga0187308_1476427	F021133	N/A	MTKRDELIRQIYENGNYAIKKICEMEPNADMANFSATDCIIGSANTHLALEIAREKGYPQDVVEYLESQSKQEQWHCQLHIGKSPKPYDFKVAQKHREVLLKYGIYVWMGVMPLLGEKIALAKAICWRRSDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELEKIVELQKEYIEKIFGLK