Scaffold Ga0187308

Basic Information
Taxon OID	3300017469 Open in IMG/M
Scaffold ID	Ga0187308_14254 Open in IMG/M
Source Dataset Name	Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5934
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5934

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location Name	YNP, Wyoming, USA
Coordinates	Lat. (^o)	44.428	Long. (^o)	-110.5885	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

YNP, Wyoming, USA

Coordinates

Lat. (^o)

44.428

Long. (^o)

-110.5885

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F085905	Metagenome	111	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_142541	F076263	N/A	MISLEDLSAILDDLEDLCARLPEGVKFHPTLEIRRGYANEEATYIKFDCHNHRYILTVVREGVAKTTRVSTREELFKRIF
Ga0187308_142542	F080247	N/A	MIVWGKLIECMIDTDVNYINGELFGNPMRIKGKFIVFGNLYTVEKAVSETETEQLCVPIDATFIVYYQGMVAIMSFYLKERDMYANISLTEPGTIKSFINMSSFYKKYGVSIPNVLDKIMYRKVPT
Ga0187308_142543	F061983	AGGAG	LKKWEFKVTVIPIKLFDEEGVLSEKEFEEVKKTMIYKGMKVLEIKDLGTDEVRKWMHFYNIVTVSEGDGLFDCYHGDTIVMEKLKGVGAIVMGDKDIQPVKTMKNLVAKWYNKQLVYEEKAYDVCNKFVT
Ga0187308_142545	F085905	N/A	MEDKSLFPSSKLSQFDYVSMNAYWLNARLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDALFVVALTHYFNVKREREYYRSIPMDGLQNVMKSLVDFMNDKLKILDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDTEAVFSGVVARHLLPFSVLEVIRRHTKK
Ga0187308_142546	F063848	N/A	MAKKRRSVHDPMLSVIHYQEQLEKMAKAYDKSMTRRNQRAVNGFAILKQVQQTVRDYLNEASEAMKKPIIAQLGVEFLGIAMAYLRASNEGFSSYALTGRVAQIATLKATGIISSTELTCAQVGEIVNGMLKKVSGMSADPLTLTENDGICEATPANPMPKLSIASPSTGYTVSLNDILKAKTPEEVLMGK
Ga0187308_142549	F087445	AGG	MTDYELKRVFKTIPIDKRLMLALDAIQEYQSIQSKFNNLLNGLAMNSPKVREVVDSARKNRKPMDRLADMFMDMMETMLKSKAMSLTDEDKAKFREKLKEVMENEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187308_14254

Overview

Ecosystem & Geography

Associated Families

Sequences