Scaffold Ga0187308_13409

Overview

Basic Information

• Taxon OID: 3300017469
• Scaffold ID: Ga0187308_13409
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8977
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F076264	Metagenome / Metatranscriptome	118	Y
F085905	Metagenome	111	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1340911	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSATRRNQRAVNGFAILKQVQQTVRDYLNQASEAMKKPIIAQLSVEFLGIAMAYLRASNEGFSSYALTGRVAQIATLKATGIVNGTELTCSQVGEIINGMLKKVSGMSADPLTFTENDGVCEATPANPMPKLSIASPSTGYTVSMTDILKAKSPEEVLMGK
Ga0187308_1340912	F085905	N/A	VEEKPLFPSSRLSQFDYVAMNAYWLNVRLKYFTDPLLYALATGIWVINLMDDIDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQSVMKSLIDFMNDKLKILDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAEAVFSGIVARHLLPFGVLETIRRYAKK
Ga0187308_1340914	F061983	AGGAGG	LKKVEIKVTVIPIKLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVKKWMHFYNLVTVAKGNGVYDCYYGDVVIVEKLEKAGGIVIKDDDPQPVKTMKTLVARWYKKQVVYEAEMEKVCNELIM
Ga0187308_134096	F076264	N/A	MPVYEVVGTSSISNAIQSMVNGLQNLFVSIVNVFGCAINAIGNTLSSLAQPIGYLIGVLAVFGSLIGIIWYVFRGRGGIGGLVGSIRNFFTGFL
Ga0187308_134098	F087445	N/A	MSSSSAKPGDELIQRLMNMSEYELKRVFKSIPIDKRLSLALDTIQEYQSIQAKFNNLLNGLAMNSPKVREVVENVRKNRKPIDRLADMFMDMMETMLKSKAMSLTDEDKAKLKEKLKQVMESEE