NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187308_13214

Scaffold Ga0187308_13214


Overview

Basic Information
Taxon OID3300017469 Open in IMG/M
Scaffold IDGa0187308_13214 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10239
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0187308_1321410F056742N/AMKLADCRYKCKQSYFRRSLFVRMFINEVEKVYAVKITSCEEFCKFYVIFLSVAEMLYGKHYNYAIFKAITRGRPNLYKCLKCDSILTTEESITHTLRHMKDLGYKPLAYNENI
Ga0187308_132146F070317AGAAGGMTQTTVNNMSTMEELKELNLEKIVKDAQEGEECVINKILKGKLTDLIPLIRDPANLSQKAMDFIQSRGEDIFYLFQCTTRQGRNIKLLVRQSFDPRSTFYNLMKKYKTLKVGDNINVFYNPEKRRYDFLL
Ga0187308_132147F077502GAGMTDVAHIVIWIDKNLPQEGKLSEIIDNLFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQNIGTLTEKVKEQVDDYFFKKLNDIYDKYYS
Ga0187308_132149F077499AGGMADLFVFPNESLKPVNYPHITNAEIIFILTITVPIAEHPNADAPMDEKMIFLSTYMPLEFQKMQYMKTIDRALDILKYSLYSREDNVLFEIANKINDMYDVKELVNKVKDVECTKDLGQIKVTLTEAKRYIYPDLSLSKHASAQAKQLGIRKYEYYARVFQCYIDQDKDLDMLTLFRVSNTIYNYIRLNNLSNLVKKMQFKNDKIAQLMEKIKQRMRITLEAMTNRKHIEPNEDILNSITIRIKEIDLG
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