Scaffold Ga0187308_12915

Overview

Basic Information

• Taxon OID: 3300017469
• Scaffold ID: Ga0187308_12915
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12526
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_129152	F081547	GAGG	MSYLRGVFVNFGEETYYLSCGIVKGGTLDPETYTVNNPELMMVRLGRDLYVVTNDLKQLIPIEPIKQLLSSETSKVYNEALSQGNEVRPA
Ga0187308_129153	F087442	GAGG	MMREGLVKAGDLVIDCKPCYIAGTGFTKDDVYVVSEGTVVFKWYDKIALITVSEEGAKVTLLDILDVRFLVERNENCLVTKL
Ga0187308_129154	F080245	N/A	MIFVWTAKVIMPGFRDEIFVSPALINSLAELTEDVYEVGMFAVPHAGYALLFLPTMVIKLDDDLLKKLEDTSIEDLNYPLNTIDHVFT