Scaffold Ga0187308_12148

Overview

Basic Information

• Taxon OID: 3300017469
• Scaffold ID: Ga0187308_12148
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44471
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (66.20%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033507	Metagenome / Metatranscriptome	177	Y
F097669	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1214838	F097669	AGG	MSEISELNSLPKIWVETQGEAPNYTYRCTACTYTNEYKETTIRHYYGTHISDDIKNKAFNIQKVALKDYGITVTLVVCSICKWSTDGRNSASVASHFYHSHVNPAVRNVTNPLVKQILERLKSLSEDELKQVLDYVNSLA
Ga0187308_1214856	F033507	N/A	MVKSNVLDVNVVKSTTSSVGTLTVNLSVTSGSGVIQQGSVYYLNPVLNGYYFCGLQMGNQSVQYTWTLNISATPVSLASGATVSVEISYFDTLPNKPYYSETWAFTLNSNGQASGGFSACMVPSSVFPESSVGIKVTSVKSASDQPISYTSSTITIIPE