Scaffold Ga0187308

Basic Information
Taxon OID	3300017469 Open in IMG/M
Scaffold ID	Ga0187308_11895 Open in IMG/M
Source Dataset Name	Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12311
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12311

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location Name	YNP, Wyoming, USA
Coordinates	Lat. (^o)	44.428	Long. (^o)	-110.5885	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

YNP, Wyoming, USA

Coordinates

Lat. (^o)

44.428

Long. (^o)

-110.5885

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1189510	F077502	GAG	MPGHGTDTARIIIWIEKNLPEEGKLSELIDSIFSLIQEIILNNLSQGKQPISFTSVREIADTFKEITYRSIEQSIGVLTDEVKEQIDTYFFRKLSEIHDKYYE
Ga0187308_1189511	F070317	GAGG	MKTTVNNMSALEELKELNLEKITKDAQEGDICVVDKILKGKLMDLMPLIRDPANLSQKAMDFIKSRGEDIFYLIQCTTRESRNVKLLIRQSFDPKSTFYNLMKKYKTIKVGDEITVFYNPEKRRYDFLL
Ga0187308_118957	F056742	N/A	MFIAEVEKVYGVKVKSCEEFCKFYILFLAVAEMLYGKHYNYAIFKTIMRGRPNLYMCVKCSSVLTAEESITHTLQHMKQLGYKPLTYEENI
Ga0187308_118958	F077499	AGG	MADLFVFPHESLKLVSYPNITNAEIIFILTISIPIGNHPESDDPMDEKIRFLSTYTPLEFQKLHYIKTIDKALDILKHFLYTREDNVLFEIANKINNLYDIKELTNKVKDVECTKDLKQINVTLTEAKRYIYPDLSLSKYASAQAKQLDIRKYEYYARLFQCYTETDKELDMLTLFRISNLVFNFIRINNLSYIIKKMQFNNGNIYKIAEKIKERVRITLDAMTDRRPVEPNENILNSITIKIKEIDLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187308_11895

Overview

Ecosystem & Geography

Associated Families

Sequences