Scaffold Ga0187308_11752

Overview

Basic Information

• Taxon OID: 3300017469
• Scaffold ID: Ga0187308_11752
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 4. Combined Assembly of Gp0212719, Gp0212720
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21418
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187308_1175210	F061983	AGGAGG	LKKYIFKVKTVPIKLTNEEGLLSEQEFQDLKKTGIYKGMKILEIKDLGYDIYWRFVHYYELVTISEGKGLFDCYYGDTIIVEKLKNVEAIVVKENNSEPIKTMKTLVAKWYNKKLIEEEKAYELCNKFVM
Ga0187308_1175211	F080247	N/A	MIVWGKVIECIIDTDVNYLNSEFFGNPLRIKGKFLVFGNFYTFERTLSEAGTEQVCVPIDATFIAYYQSMVAIISFYIKERDIYANISLTDPDTIKEFITMSTYYRRYGVSIPNVLDKIMYRKVPT
Ga0187308_1175212	F076263	AGTAG	MLSAEDLSAVLDDLEDLCARLPEGVTFHPTLEIHRHYANEEATYIKFDCRNHKYILTIVRTGVAKTTRVSSREELFRRVFPEYSPGFTGSYTEEYWGEE
Ga0187308_1175213	F081547	GAG	MSYLRGVFVHFGDETYYLSCGIVKGGNLDAETYTINNPEMMVVRLGRDIYIVTSDLRQLVPVEPIRVLLDSETSKVYNEIVMQGNEVKPT
Ga0187308_1175214	F087442	GAGG	MREGLVKAGNLVIDCKPCYIIGTGFTKDDIYIISEGTVVFKWYDKIAVIVVGEEGTKINLLDIIDVRFLVERNENCLVTKL
Ga0187308_1175215	F080245	N/A	MIFIWSARVIIPGFRDEIFISPALINMYTQLTEDVYEAGMFMVPHRGHALLFLPTMIIKFDDQLLKQLEETSIEDLNYPLNTIDHVFT
Ga0187308_1175216	F075084	GAG	MRPCRKDLCLLYSLGVDYAKLMDFTNENPQGILFRRAERAIIYNRRITALWYGYDTGMLIESVLRRILKRSITYCNLMKKLGVESEFCRRFTYYDEVQCENISEYDVDVAYADITHMIADYNNETASEIFTKMIKECSTYEVR
Ga0187308_117522	F076264	N/A	MVNGLQNLFVALVDVFANAVNAIGNTLSSLATPIGYLVGVLAVFGSLISIIYYVFRGRGGVSGLVGGLKGFFTSFL
Ga0187308_117524	F087445	N/A	MSSSSSKPTDDLVQRLMNMSDYDLKRLFKMLPIDKRLILAMDAIQEYQNIRNRFDNLFNSFAMNSPKVREVVDSARRNRKPIDRLADMFMDMMETMLKSKAMSLTDEDKVKLKEKLKEVMESEE
Ga0187308_117527	F063848	GAG	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEQSATRRNQRAVNGFTVLKQVQQTVRDYLNEVSQSMKAPVIAQLAVEFLGVSMAYLKGSNEGYNSYALTGRVAQIATLKATGIINTTTLNCSQVGEIINGMLKKISGATEDPLSFTEEDGVCKATVANPLPKLSIASTSTGYTISLADILKAKTPEEVLMGK
Ga0187308_117528	F085905	N/A	MEKELLFPSSRLSQFDYVVMNAYWLNVRLKYFTDPILYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQEVMKSIVQFMNDKLKIIDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAEVVFQGVVARHLLPFSVLEVIRRHLKK