Scaffold Ga0182196_1041149

Overview

Basic Information

• Taxon OID: 3300017432
• Scaffold ID: Ga0182196_1041149
• Source Dataset Name: Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 793
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000661	Metagenome / Metatranscriptome	950	Y
F017779	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182196_10411491	F000661	N/A	EFFATNPLDPLHWTLNSCFGAFRTIWVHLRPFGCLTKLGAKRFELVQKFVARRCVGGFRYEHTRSTPLDPKHMFWSVSYHLRAFGTIRLPYKTQGKTFRISAKVRATRSRQSFS
Ga0182196_10411492	F017779	GGAG	MNPPDPPHWTLNYRFAAFRKIWVHLGPFGCLTKLGAKRAELVQKFVPRSCVRVFRDEHTRSTPLDTKLSFFCISYHLGAFGTVWLPYETRCKTG