Scaffold Ga0182192_1034154

Overview

Basic Information

• Taxon OID: 3300017430
• Scaffold ID: Ga0182192_1034154
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_22AUG2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 874
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002171	Metagenome	587	Y
F014027	Metagenome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182192_10341541	F002171	N/A	VNRPVTKTSTQDAYSALTGSENFILAKNWSQVPLFVVTSFLLILSTSSEFSTGHTIHLFKLIFSVVTSFVLLSEEKCKKIKR
Ga0182192_10341542	F014027	AGAAG	MSLTKXKAWPMENSENMLKIEQKLVAMKRGSCDKFLAKIKFSEPGEAE