NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182195_1214750

Scaffold Ga0182195_1214750


Overview

Basic Information
Taxon OID3300017414 Open in IMG/M
Scaffold IDGa0182195_1214750 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000199Metagenome / Metatranscriptome1639Y
F017779Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0182195_12147501F000199N/ATKLGAKWAELVQKFVPRSRIGFFRNESTRSILLDPKLMFWCVSYHLGAFGTIMLPYEIRCKTGQTSAKVRATKLRRSFTR
Ga0182195_12147502F017779GGAGMNTPDPPHWTLNSCFGAFRTIWVHLRPFGCLTKLRAKCFEQVQKFVARRRVGVFRYERTRSTPLDPKHMFWIVSYHLRAFGIVRLPYKTR

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