Scaffold Ga0182204_1012904

Overview

Basic Information

• Taxon OID: 3300017409
• Scaffold ID: Ga0182204_1012904
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12SEP2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 968
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000130	Metagenome	1990	Y
F001365	Metagenome	713	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182204_10129041	F000130	GGA	MELLGDVGHVESRSVRLEMVLVLVQDSCTVCAKHTVGSNIV
Ga0182204_10129042	F000130	GGA	MELLGDVGHVESRSIRLEKVLVLMEDWCTVCAKRTIGSDIVLDTPYGTPR
Ga0182204_10129043	F000130	GGA	MELLGDVGHVESRPVRMEMVLVLVQVRCTVCAKHTIGSDIV
Ga0182204_10129044	F001365	N/A	HPMVLLGDEAQLESRFGPFGDSANLDLRSMHGLRRTYHSLGNCFGRTQWKS