Scaffold Ga0182197_1086072

Overview

Basic Information

• Taxon OID: 3300017408
• Scaffold ID: Ga0182197_1086072
• Source Dataset Name: Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 624
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000412	Metagenome / Metatranscriptome	1169	Y
F009249	Metagenome / Metatranscriptome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182197_10860721	F009249	N/A	MKTHIEYPDIFFXKYNSPYHIEMGTYVLIDLLXAGGSVAPA
Ga0182197_10860722	F000412	N/A	CRAIRRAXEPRIHSPCRLNAINHATGSKSGSYRSSXNRGTEYYPVGMKTHIEYPDIIFXKYNSPYHIEMGTYVLIDLLXAGGSVAPAQPTSLRXNRGIFAQTCSACLEGPYRKDSSGGHPCRAIDRAXEPRIHSPCSLKDITHATGSKIGSSRSQIGIGAQNTTM