Scaffold Ga0182220_1024344

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182220_1024344

Scaffold Ga0182220_1024344

Overview

Basic Information
Taxon OID	3300017407 Open in IMG/M
Scaffold ID	Ga0182220_1024344 Open in IMG/M
Source Dataset Name	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_03OCT2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	757
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005198	Metagenome	408	Y
F034798	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182220_10243441	F005198	N/A	ADYRRRVKAQFDVLEQDAPTQRDKFDTVVAGVKPVLNCVDLEVAPQPDGRAPRSNTIIQRCRAAWESFKSFNRDVVVTAITHALTMV
Ga0182220_10243442	F034798	GGA	MGEAEHQQLEDEVEDAVKKLAGDIDLFGETRGDGEAR

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