Scaffold Ga0186687_1036317

Overview

Basic Information

• Taxon OID: 3300017381
• Scaffold ID: Ga0186687_1036317
• Source Dataset Name: Metatranscriptome of coastal eukaryotic communities from Indian River Bay, Delaware, USA in L1 medium, 22 C, 34 psu salinity and 709 ?mol photons light - Prorocentrum minimum CCMP 2233 (MMETSP0268)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 704
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Indian River Bay, Delaware
• Coordinates
  • Lat. (^o): 38.59
  • Long. (^o): -75.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012193	Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186687_10363171	F012193	N/A	PPRPRSLPGRCPRRPPPAQVMKLAALCATALLARAVGSRVRARARQEPDTACGKGFDELVPGSKDYFATASVELFVHPGKRSDNATFATELQCWFAHMVTQSCGGLPSQAAERKKKLTEACTAIPVDWQVVWKMFSTEEVDYFKREYPAKDPSEEGGMEAATKVNTNAPGESPIAYKQAMETVKQVDKKEVLCLTLFTIDDECVKHEYIRLAK