NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186251_1003524

Scaffold Ga0186251_1003524


Overview

Basic Information
Taxon OID3300017365 Open in IMG/M
Scaffold IDGa0186251_1003524 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Ross Sea in marine media K with soil extract, 1 C, 36 psu salinity and 367 ?mol photons light - Geminigera sp. Caron Lab Isolate (MMETSP1102)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2151
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameRoss Sea
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038252Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0186251_10035241F038252N/AQRMAIPNQDAGHGTFSPVVSTRPTNKALRVAATGAAVILACAAVVALVGVSTQNQEAELVIVQPHASLNELADYFLANGNGMSPKDAMSKIKAWNSGTPAASLAVVAPGKTQMLNSYKSTSELADSSLLCEKREKIIKLFDELLAKLGGEELSANITMGKVTAEWKDALSSWLDSESQYRLTVEKTKEAKDGSEFARNEYEKWKTAHSAAKRDLAATLARHAEERQNLLDERELIKEIMRYIGVLHDVKASEKSVAAGGRDSVVDPQTGVSDPYATKKATTSAQLAAKVKKLQQLVLKTKLPGSTQKLAQIQSLPIYSETEEVAKILKEMLSDLSTRLSVIDEVDAQATKLVSDSYDKMVEWEQKLVKLADEADKAKEKMMSEKLQREKLAGEKDVASKNYDSESAAYKLVISPYEREIYVITMIKIKINEHCDRLARGEASTFGQ
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