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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017357 Open in IMG/M |
| Scaffold ID | Ga0186038_109273 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine host-associated eukaryotic communities from unknown location in f/2 medium with natural seawater, 50% L1 mix, no silicate, at 29 C, 35 psu salinity and 369 ?mol photons light - Symbiodinium sp. C1 (MMETSP1369) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | National Center for Genome Resources |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1564 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | ||||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003025 | Metagenome / Metatranscriptome | 512 | Y |
| F074901 | Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0186038_1092731 | F074901 | N/A | IGSDCTSQSHFPLLPASESFSMATSAPLLGAEKKKGGHSKASIFYGADEYLEELKKKYAHDHEIAALKNLLPGEGDPNAAGVAASQDKMLKVEKNNENRSLKTNRLSPTANKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFVTQVLMVIGYCAALATFPEYWWTCTLLFGLPFSYIAIQQIYIDHDVMHGATFPVYDFQKFLTHSFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPFSTNWYKYILTVPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKMQ |
| Ga0186038_1092732 | F003025 | GGA | MVPRRLKHNAFVLSLWACVWLLGTYPLGRPLSEGWRFMFTVSFFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |