Scaffold Ga0186619_1040198

Overview

Basic Information

• Taxon OID: 3300017355
• Scaffold ID: Ga0186619_1040198
• Source Dataset Name: Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 742 ?mol photons light - Karenia brevis SP3 (MMETSP0527_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 720
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063312	Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186619_10401981	F063312	AGGA	MPEYKLATNANNKATELPLCRIQGSVQKNPHMRAFWASTISFFLAFLGWFALAPLALDVAKSMEICENQLFPPETFKTRKAYLKFKNLKTEKFYCKYGKNDKDKPTDCKPPPPETEAECALTGATKDKCNRYDPKVLTKCVCTGGTECKSVLANAGVASVGSTIFVRVALGTLLERFGPVNVQSSLLLFGAIWVFAAAGISAPWNY