Scaffold Ga0186051_1022897

Overview

Basic Information

• Taxon OID: 3300017327
• Scaffold ID: Ga0186051_1022897
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from York River, Chesapeake Bay in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 264 ?mol photons light - Kryptoperidinium foliaceum CCAP 1116/3 (MMETSP0118_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1007
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: York River, Chesapeake Bay
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000342	Metatranscriptome	1262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186051_10228971	F000342	AGG	MSKPYGSFQGQAFAGGGGMDARAPGSVFAPGKRRRMNLVAICINIFVPWFTFAAIFAGMSFSLHYQRPSAAWMLVVLGLVFTGVSGFLAVRAKQRERDEMWYTFSTIALLVATVAAAIFGDMNFWFNMQPYYDIENLNTYPSVNPAREKGQQLMDAGRVYFADGTGLDMRKAMGFKNLDLYCVAPIVHGEEQLASYDFWAVGVNCCSGVSSDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQAEAAYNIKSTHPLFFYWMQDPVAEMNAYRDDGFKYYLLGIFTHFAFNLFCVVCAIVGFSKIGRY