NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186051_1009387

Scaffold Ga0186051_1009387


Overview

Basic Information
Taxon OID3300017327 Open in IMG/M
Scaffold IDGa0186051_1009387 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from York River, Chesapeake Bay in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 264 ?mol photons light - Kryptoperidinium foliaceum CCAP 1116/3 (MMETSP0118_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: York River, Chesapeake Bay
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054881Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0186051_10093871F054881N/AEVDDNKRSKKTQRAIPTPNIPDPMPSELAFMFTKISPEQKMYMWNIYTLIFVAECLAVVLYWALLLYGPGLGLTFGAATGIYASIMIPLCIQNIYILHDVVHGATFPPYEWQNYITHPWADFFSLPWMEVIMEHNRHHNSTFDLLNHGEFGWDPANWLYVLQEWTFEWYGWLTVPLIPFWHMLGANDTGSIFALLWWSQFPDAGAGGKCDKAFFKKWLPLRVKHNAFVLSLWACVWLLGSYGLGRPLSEGWRFVLWVSLFMRIGFAAAWIFIANFNHSHLWNEFLASDPDRTWPVLHATMAFLHGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWISSDAETVMDKHQKKRSLVLKSRKASAKVGQ

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