Scaffold Ga0186089_1039139

Overview

Basic Information

• Taxon OID: 3300017317
• Scaffold ID: Ga0186089_1039139
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 24 C, 32 psu salinity and 647 ?mol photons light - Alexandrium monilatum CCMP 3105 (MMETSP0097)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 793
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051939	Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186089_10391391	F051939	GGAG	MGYLQSEFGRVKGDHSKLYLHQIQQLQPPEDCTLDLRHIATLWKLDADHDGCVTFQELLEFAEFTNEHRRILGSLDFQGKLKAQCVMDLWEVICEEQGESAFADWMVLLVCQGDSYHESSASPNVRFMSRDAVMTLYELLQPYQVALHIDQQGFLDMLQQIGENQGLMSLQAEELDDWVPIEVVQRWVKRFISAYASLFRELGLEPPRPSSAHE