NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186449_105911

Scaffold Ga0186449_105911


Overview

Basic Information
Taxon OID3300017310 Open in IMG/M
Scaffold IDGa0186449_105911 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Great Marsh, Delaware in seawater, 23 C, 32 psu salinity and 622 ?mol photons light - Aristerostoma sp. ATCC 50986 (MMETSP0125)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1570
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: Great Marsh, Delaware
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034478Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0186449_1059111F034478N/AMDVESNQLIQVDRPTVVRKVDIYGQPSDGKTSFDHREESEPVGNFLAQMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTTASANQKVGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGDTKKFDFLKGEGDNFPGYVVGFYGQYDENHITYLGVYVAPLTEINYYARRPYILTFKKMQNDKALIAEVAKNLSVERDNERFKDANLEDTDGNSSKILLYFLDASLQHPELFKAVLEYL
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