Scaffold Ga0186043_1006377

Overview

Basic Information

• Taxon OID: 3300017272
• Scaffold ID: Ga0186043_1006377
• Source Dataset Name: Metatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in f/2 medium w/o silicate, 25 C, 35 psu salinity and 713 ?mol photons light - Gambierdiscus australes CAWD 149 (MMETSP0766_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1653
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 35.0
  • Long. (^o): 173.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073576	Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186043_10063772	F073576	AGG	MSKPLEELCCGDRVRVLGGKNFEKFHGGMEGTITENCPDSRNMVVQFDDACTSGPEPIRVAYRHLEFAPNKGGYCAGHGTVPLGQPEAKGGDKETQGALLDEHGDFRARQLVQLSGLQGAAELNGKLGRLRKFDVNAERWEVDVRGGAGVKRLKEANLVPPPRPEVPVGLSVAELKEKGNECFKAAELEQAVAYYGAALDLLEEGELRPPEAEDPKYVSVLYGNRAQCYITLCREVHGEEKLIGKEARGYAMKANMDSARAIELDPTNGKAYYRRGCAVLGMAPSASRAKEAIHCLEVALSGRASGGKDGIVLPNAMRHEVTSLLDYAKRRLDACVEAAVPDVEQCRENCRQQ