Scaffold Ga0186299_100431

Overview

Basic Information

• Taxon OID: 3300017213
• Scaffold ID: Ga0186299_100431
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 15 C, 32 psu salinity and 351 ?mol photons light - Pelagococcus subviridis CCMP 1429 (MMETSP0885)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3544
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9166
  • Long. (^o): -145.1166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026197	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186299_1004313	F026197	AGGAGG	VVKAILFGERVDQRAATSLVCAPQEEAPEEKRRQPRSAEHTMKAAALVALCLQRAVALPRLADEKMLCERGRCDAHGLKYERVMPSQPGYQWDDAGGYCGSWATQRAALTVGAWISQQQVRDHASDCGGHDSEILSCNIEEALTGLKLEFNAWDYKNESTPQTDAYAAWLKAQLAGGHAVAWMIMWSGQDYPIYDLTPPDGMYGHVEPVIGVASNHPLNDTTVYDDDVVLHYTDGGVNTVQRGLTTLAGEWAGPGEKADCGDYQYCVGNPYGFGWAIKGYAARDGAVAASLRVAPFLSEPDTRSGEAPESLRGTVTATGLTPGAAYDVYRWDDVENVGTFDDAHKSATFTASKDAHVYVDDKSIPSDGTTYYKVVLASA