Scaffold Ga0186161_116250

Overview

Basic Information

• Taxon OID: 3300017124
• Scaffold ID: Ga0186161_116250
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, low iron, at 5 C, 35 psu salinity and 560 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0903)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 818
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099352	Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186161_1162501	F099352	AGGTGG	LSVIVYSHPHIIARHKLTSLSSSKTVSSNSNRVILDSQELNAASGAFNLCCGEAYARFTELKRIKIHPGNMTKERDAVESCSANVYNGIQSSCAEQFDAVKSCVSDNPREWAKCASARRELEVCSVRNNLGELKKA