Scaffold Ga0186499_111505

Overview

Basic Information

• Taxon OID: 3300017074
• Scaffold ID: Ga0186499_111505
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Baffin Bay in K medium with sea water and antibiotics, no NH4Cl, 6 C, 33 psu salinity and 196 ?mol photons light - unclassified eukaryote CCMP 2298 (MMETSP1141)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 832
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Baffin Bay
• Coordinates
  • Lat. (^o): 77.0014
  • Long. (^o): -77.2383
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037232	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186499_1115051	F037232	N/A	MATMTGAFQIYDLVNTVYGTGYVAGIRKNSYVVLLTHWHLAQGQSPTLFLQEDGMKKIPSGALPGTTVKTVYGPAQMQSVRFDNVHIAKPINWKLANNTVATLYLQPEAVTLSQTPGFEEGDEVMTVYGQGHIASKREKEGDLVVLLNDWALAQGQSPTCYLSPDSCVKVPGLEIGAAAKTVWGLMRVLGLRRDGTHICEAMHWNLADGKPPKLYLAPEAFVLQSLKP