Scaffold Ga0186077_103425

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0186077_103425

Scaffold Ga0186077_103425

Overview

Basic Information
Taxon OID	3300017061 Open in IMG/M
Scaffold ID	Ga0186077_103425 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	991
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033310	Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186077_1034251	F033310	N/A	VVQIARRDMPKGEEVFLWPGRLSNSEMVVRHGMSFQRNPIGIGRNITQPPNWNDNPSSKVRLEYEKYNCSTLEAFELRFSPLGTPSKSFVRCYRISWFLVNGWYSPGLQSRRRELDKWPPPKKYSKDDWLSWTQADAEVNRVILEYCRDMRGRLKDMLDSATAEDFRKSKDPLDKLIWKLRSEESKTFKECINAARAIS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.