Scaffold Ga0186349_106022

Overview

Basic Information

• Taxon OID: 3300017047
• Scaffold ID: Ga0186349_106022
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 211 ?mol photons light - Florenciella sp. RCC1007 (MMETSP1324)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1313
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: North Sea
• Coordinates
  • Lat. (^o): 61.0
  • Long. (^o): 1.98333333
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028062	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186349_1060221	F028062	N/A	RRHCSASVDNCLTYHPSIAAMKTTLSLILLGSATALPIYHNESTLCRNGRCDKQDLKYERIIPAQPGQQWNDAGGYCGSWAVQRATLAKGAWVSQQQVRDHTVDCGGHDSEILSCNIAEALDNLKISYEAFDYENTPLPQTDEYAKWLKAQLVAGNAVAWMIMWSGQSYPIYDLTPPAGMYGHVEPVIGIQSNHPLDDTEVYDDDVVLHYDDNGVRTINRLISSLPGTWAGEGEPADCGDYDYCIGNPYGFGWAVKGGFTSEKTDTMPASLSVDPWYKEPDTRSGEAPEALKGTLTVTGLTSGASYDIYRWDTVESAFVEYDDAHKRTTFDATDETYVFADDLGILSNGTTYYEAVKSA