Scaffold Ga0186657_110586

Overview

Basic Information

• Taxon OID: 3300017044
• Scaffold ID: Ga0186657_110586
• Source Dataset Name: Metatranscriptome of coastal eukaryotic communities from Seto Inland Sea in f/2 medium with seawater, 14 C, 36 psu salinity and 214 ?mol photons light - Skeletonema japonicum CCMP 2506 (MMETSP0593)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 962
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Japan: Seto Inland Sea
• Coordinates
  • Lat. (^o): 34.3
  • Long. (^o): 132.4
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186657_1105861	F034938	N/A	HSSMHFKENTDDAEVLPRRLAYPKMAASQPNAYVIRNRFAAYELPVAVAQRDDEETIPSIGNNMTQWRGNAVSEKEANALRYVFDDLQDHFGYQCVDPRVRFNNTNLKHLGNSGKWFGDLDFTYNIKGDHCNLSYIGIDVCVDLAPKLVHKHGQPMWKDYGKSFLYVYLPQLTYNKFKSYVKFGTGWDVSDEGTVYDPNRDMVAIEAKVQSGQCESSFWAAKEKPFEGAGDRSFSRIGTIQDVKSHSSQQRIHRGVGIFSVSMEVEGTPNFKPSPQMGEEVDLCFTLVSLRTWGTTDGIAPIVYVPHKEH