Scaffold Ga0186054_114504

Overview

Basic Information

• Taxon OID: 3300017017
• Scaffold ID: Ga0186054_114504
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Woods Hole, Massachussetts in DYV freshwater medium, 18 C, 0 psu salinity and 394 ?mol photons light - Dinobryon sp. UTEXLB2267 (MMETSP0019_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Sippewissett Pond, Woods Hole, Massachussetts
• Coordinates
  • Lat. (^o): 41.57595
  • Long. (^o): -70.64038

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037232	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186054_1145041	F037232	N/A	LELDVKFQIFETVNTVYGPGYVSGIREDCYVVKLVNWALAQGQSPTLYLQTEALSKVPGAFPGTTVSTSFGPARIEKIRADGVHIAKPINWKLANDTVATLYLQPEMVKLAQTPGLEEGDEVMTVYGQGFVAKKRAQEGDYVVKLRHWALAQGQSPTCYLQASACVKIPGLKIGSIAKTVWGLVKLQEIRRDGTHVCVGIHWALADGKPPTFYLAPEAFALLSLKP