Scaffold Ga0186588_112224

Overview

Basic Information

• Taxon OID: 3300016994
• Scaffold ID: Ga0186588_112224
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium with silica, 4 C, 35 psu salinity and 494 ?mol photons light - Minutocellus polymorphus RCC 2270 (MMETSP1322)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 609
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Cymatosirophycidae → Cymatosirales → Cymatosiraceae → Minutocellus → Minutocellus polymorphus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 71.18333333
  • Long. (^o): -159.4166667
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067805	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186588_1122242	F067805	N/A	MGGKGKQKIEDVTLSKKEQKKVTKLEAQIPYHEGRGEKEEADKIQQKIDAIWAKAKEAAFAM